diff --git a/ed_intrav.cpp b/ed_intrav.cpp index 942fd42..49b1fd6 100644 --- a/ed_intrav.cpp +++ b/ed_intrav.cpp @@ -306,8 +306,8 @@ DIST_TYPE edit_dist(uint8_t* refSeq, int refLen, uint8_t* querySeq, int queryLen #endif alignedQLenLow = alignedQLenHigh = queryLen ; alignedRLenLow = alignedRLenHigh = queryLen ; - maxScoreLow = queryLen - hdist - hdist * 6 ; - maxScoreHigh = queryLen - hdist - hdist * 4 ; + maxScoreLow = initScore + queryLen - hdist - hdist * 6 ; + maxScoreHigh = initScore + queryLen - hdist - hdist * 4 ; return hdist ; }