From 09ee115dcc555c71e65a0f00456753b65b307115 Mon Sep 17 00:00:00 2001
From: Heng Li <lh3@me.com>
Date: Tue, 19 Jun 2012 13:29:44 -0400
Subject: [PATCH] r126: release bwa-0.6.2

---
 NEWS   | 19 +++++++++++++++++++
 bwa.1  |  2 +-
 main.c |  2 +-
 3 files changed, 21 insertions(+), 2 deletions(-)

diff --git a/NEWS b/NEWS
index 5cced2b..d68c693 100644
--- a/NEWS
+++ b/NEWS
@@ -1,3 +1,22 @@
+Release 0.6.2 (19 June, 2012)
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+
+This is largely a bug-fix release. Notable changes in BWA-short and BWA-SW:
+
+ * Bugfix: BWA-SW may give bad alignments due to incorrect band width.
+
+ * Bugfix: A segmentation fault due to an out-of-boundary error. The fix is a
+   temporary solution. The real cause has not been identified.
+
+ * Attempt to read index from prefix.64.bwt, such that the 32-bit and 64-bit
+   index can coexist.
+
+ * Added options '-I' and '-S' to control BWA-SW pairing.
+
+(0.6.2: 19 June 2012, r126)
+
+
+
 Release 0.6.1 (28 November, 2011)
 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 
diff --git a/bwa.1 b/bwa.1
index caa60cb..66bc9a2 100644
--- a/bwa.1
+++ b/bwa.1
@@ -1,4 +1,4 @@
-.TH bwa 1 "28 November 2011" "bwa-0.6.1" "Bioinformatics tools"
+.TH bwa 1 "19 June 2012" "bwa-0.6.2" "Bioinformatics tools"
 .SH NAME
 .PP
 bwa - Burrows-Wheeler Alignment Tool
diff --git a/main.c b/main.c
index 4bb1197..0e7af77 100644
--- a/main.c
+++ b/main.c
@@ -4,7 +4,7 @@
 #include "utils.h"
 
 #ifndef PACKAGE_VERSION
-#define PACKAGE_VERSION "0.6.1-r125"
+#define PACKAGE_VERSION "0.6.2-r126"
 #endif
 
 static int usage()