2023-08-24 14:30:01 +08:00
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time ./bwa mem -t 12 -M -R @RG\\tID:normal\\tSM:normal\\tPL:illumina\\tLB:normal\\tPG:bwa \
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2023-08-24 14:27:12 +08:00
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/home/zzh/data/reference/human_g1k_v37_decoy.fasta \
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/home/zzh/data/fastq/nm1.fq \
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/home/zzh/data/fastq/nm2.fq \
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-o /dev/null
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2023-08-24 14:30:01 +08:00
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# time ./bwa mem -t 1 -M -R @RG\\tID:normal\\tSM:normal\\tPL:illumina\\tLB:normal\\tPG:bwa \
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2023-08-24 14:27:12 +08:00
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# /public/home/zzh/data/reference/human_g1k_v37_decoy.fasta \
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# /public/home/zzh/data/fastq/ZY2003109152013000/nm1.fq \
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# /public/home/zzh/data/fastq/ZY2003109152013000/nm2.fq \
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# -o /dev/null
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2023-08-24 14:30:01 +08:00
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# time ./bwa mem -t 64 -M -R @RG\\tID:normal\\tSM:normal\\tPL:illumina\\tLB:normal\\tPG:bwa \
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# /public/home/zzh/data/reference/human_g1k_v37_decoy.fasta \
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# /public/home/zzh/data/fastq/ZY2003109152013000/nm1.fq \
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# /public/home/zzh/data/fastq/ZY2003109152013000/nm2.fq \
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# -o /dev/null
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2023-08-24 14:27:12 +08:00
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2023-08-24 14:30:01 +08:00
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#/public/home/zzh/data/fastq/n1.fq \
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#/public/home/zzh/data/fastq/n2.fq \
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#/share_nas3/zyseq-release-v1.1.3/zyseq/wes/resource/reference/human_g1k_v37_decoy.fasta \
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#/share_nas3/zyseq-release-v1.1.3/zyseq/data/n1.fq \
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#/share_nas3/zyseq-release-v1.1.3/zyseq/data/n2.fq \
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#-o reads_mapping.sam
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2023-08-24 14:27:12 +08:00
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