55 lines
3.3 KiB
Makefile
55 lines
3.3 KiB
Makefile
# Makefile variables useful for third-party code using htslib's public API.
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#
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# Copyright (C) 2013-2017, 2019-2020 Genome Research Ltd.
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#
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# Author: John Marshall <jm18@sanger.ac.uk>
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#
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# Permission is hereby granted, free of charge, to any person obtaining a copy
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# of this software and associated documentation files (the "Software"), to deal
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# in the Software without restriction, including without limitation the rights
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# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
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# copies of the Software, and to permit persons to whom the Software is
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# furnished to do so, subject to the following conditions:
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#
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# The above copyright notice and this permission notice shall be included in
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# all copies or substantial portions of the Software.
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#
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# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
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# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
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# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL
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# THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
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# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
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# FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER
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# DEALINGS IN THE SOFTWARE.
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# These variables can be used to express dependencies on htslib headers.
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# See htslib.mk for details.
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htslib_bgzf_h = $(HTSPREFIX)htslib/bgzf.h $(htslib_hts_defs_h)
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htslib_cram_h = $(HTSPREFIX)htslib/cram.h $(htslib_hts_defs_h) $(htslib_hts_h) $(htslib_sam_h)
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htslib_faidx_h = $(HTSPREFIX)htslib/faidx.h $(htslib_hts_defs_h) $(htslib_hts_h)
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htslib_hfile_h = $(HTSPREFIX)htslib/hfile.h $(htslib_hts_defs_h)
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htslib_hts_h = $(HTSPREFIX)htslib/hts.h $(htslib_hts_defs_h) $(htslib_hts_log_h) $(htslib_kstring_h) $(htslib_kroundup_h)
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htslib_hts_defs_h = $(HTSPREFIX)htslib/hts_defs.h
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htslib_hts_endian_h = $(HTSPREFIX)htslib/hts_endian.h
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htslib_hts_expr_h = $(HTSPREFIX)htslib/hts_expr.h $(htslib_kstring_h) $(htslib_hts_defs_h)
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htslib_hts_log_h = $(HTSPREFIX)htslib/hts_log.h $(htslib_hts_defs_h)
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htslib_hts_os_h = $(HTSPREFIX)htslib/hts_os.h $(htslib_hts_defs_h)
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htslib_kbitset_h = $(HTSPREFIX)htslib/kbitset.h
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htslib_kfunc_h = $(HTSPREFIX)htslib/kfunc.h $(htslib_hts_defs_h)
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htslib_khash_h = $(HTSPREFIX)htslib/khash.h $(htslib_kstring_h) $(htslib_kroundup_h)
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htslib_khash_str2int_h = $(HTSPREFIX)htslib/khash_str2int.h $(htslib_khash_h)
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htslib_klist_h = $(HTSPREFIX)htslib/klist.h
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htslib_kroundup_h = $(HTSPREFIX)htslib/kroundup.h
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htslib_kseq_h = $(HTSPREFIX)htslib/kseq.h
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htslib_ksort_h = $(HTSPREFIX)htslib/ksort.h $(htslib_hts_defs_h)
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htslib_kstring_h = $(HTSPREFIX)htslib/kstring.h $(htslib_hts_defs_h) $(htslib_kroundup_h)
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htslib_regidx_h = $(HTSPREFIX)htslib/regidx.h $(htslib_hts_h)
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htslib_sam_h = $(HTSPREFIX)htslib/sam.h $(htslib_hts_h) $(htslib_hts_endian_h)
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htslib_synced_bcf_reader_h = $(HTSPREFIX)htslib/synced_bcf_reader.h $(htslib_hts_h) $(htslib_vcf_h) $(htslib_tbx_h)
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htslib_tbx_h = $(HTSPREFIX)htslib/tbx.h $(htslib_hts_h)
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htslib_thread_pool_h = $(HTSPREFIX)htslib/thread_pool.h $(htslib_hts_defs_h)
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htslib_vcf_h = $(HTSPREFIX)htslib/vcf.h $(htslib_hts_h) $(htslib_kstring_h) $(htslib_hts_defs_h) $(htslib_hts_endian_h)
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htslib_vcf_sweep_h = $(HTSPREFIX)htslib/vcf_sweep.h $(htslib_hts_h) $(htslib_vcf_h)
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htslib_vcfutils_h = $(HTSPREFIX)htslib/vcfutils.h $(htslib_vcf_h)
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