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FastDup
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zzh 2024-12-18 22:22:10 +08:00
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@ -59,9 +59,11 @@ make
cd FastDup cd FastDup
mkdir build && cd build mkdir build && cd build
cmake .. -DCMAKE_BUILD_TYPE=Release cmake .. -DCMAKE_BUILD_TYPE=Release
make && sudo make install make
``` ```
The generated binary fastdup will be in the build/bin folder.
## Usage ## Usage
1. get help 1. get help
@ -70,7 +72,7 @@ make && sudo make install
fastdup --help fastdup --help
``` ```
2. mark duplicates on an input BAM file 2. mark duplicates on an input BAM file using 8 threads
```bash ```bash
fastdup --input in.bam --output out.bam --metrics stats.txt --num-threads 8 fastdup --input in.bam --output out.bam --metrics stats.txt --num-threads 8