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liyewen521 2025-04-16 14:38:56 +00:00
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README.md
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Identifies duplicate reads. This tool locates and tags duplicate reads in a coordinate ordered SAM or BAM file. Identifies duplicate reads. This tool locates and tags duplicate reads in a coordinate ordered SAM or BAM file.
Use the same algorithm as picard MarkDuplicates and output identical results. Use the same algorithm as picard MarkDuplicates and output identical results, and use spdlog as log tool and the default level is 'info'.
Use spdlog as log tool and the default level is 'info'.
### Features ### Features
@ -30,19 +29,13 @@ Use spdlog as log tool and the default level is 'info'.
## Requirements ## Requirements
### Build tools Install following tools and required libraries.
* autoconf (for htslib) ```bash
* cmake # install autoconf (for htslib), cmake, c++17 (gcc >= 8.1 or clang >= 7 should work), zlib, libbz2, liblzma, libcurl, libdeflate (optional)
* c++17 (gcc >= 8.1 or clang >= 7 should work.) sudo apt update
sudo apt install autoconf cmake g++-8 zlib1g-dev libbz2-dev liblzma-dev libcurl4-openssl-dev libdeflate-dev gcc-8 g++-8
### Libraries needed ```
* zlib
* libbz2
* liblzma
* libcurl
* libdeflate (optional)
## Install ## Install