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测试代码，不输出bam文件

This commit is contained in:
zzh 2025-02-17 22:37:37 +08:00
parent ed27b0387f
commit 670d777824
1 changed files with 3 additions and 2 deletions
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5
src/markdup/markdup.cpp
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@ -26,7 +26,7 @@ Date : 2023/10/23
namespace nsgv { namespace nsgv {
MarkDupsArg gMdArg; // 用来测试性能 MarkDupsArg gMdArg; // 参数
std::vector<ReadNameParser> gNameParsers; // 每个线程一个read name parser std::vector<ReadNameParser> gNameParsers; // 每个线程一个read name parser
samFile *gInBamFp; // 输入的bam文件 samFile *gInBamFp; // 输入的bam文件
sam_hdr_t *gInBamHeader; // 输入的bam文件头信息 sam_hdr_t *gInBamHeader; // 输入的bam文件头信息
@ -177,7 +177,8 @@ int MarkDuplicates() {
int64_t realDupSize = 0; int64_t realDupSize = 0;
// exit(0); return 0;
PROF_START(write); PROF_START(write);
while (inBuf.ReadStat() >= 0) { while (inBuf.ReadStat() >= 0) {
PROF_START(final_read); PROF_START(final_read);