From 1c35dafbf8f1e0042a8b54af360a6d15cc6b2430 Mon Sep 17 00:00:00 2001 From: zzh Date: Sat, 14 Dec 2024 01:41:08 +0800 Subject: [PATCH] =?UTF-8?q?=E5=88=9B=E5=BB=BA=E6=89=80=E6=9C=89=E7=9B=B8?= =?UTF-8?q?=E5=85=B3=E4=BB=A3=E7=A0=81=E6=96=87=E4=BB=B6=EF=BC=8C=E6=AD=A3?= =?UTF-8?q?=E7=A1=AE=E7=9A=84=E5=91=BD=E5=90=8D?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit --- CMakeLists.txt | 0 src/CMakeLists.txt | 0 src/main.cpp | 0 src/markdup/args.cpp | 0 src/markdup/args.h | 0 src/markdup/dup_metrics.h | 0 src/markdup/global_vars.h | 0 src/markdup/markdup.cpp | 0 src/markdup/md_funcs.cpp | 0 src/markdup/md_funcs.h | 0 src/markdup/md_types.h | 0 src/markdup/pipeline_md.cpp | 0 src/markdup/pipeline_md.h | 0 src/markdup/read_ends.h | 0 src/markdup/read_name_parser.h | 0 src/util/bam_buf.cpp | 0 src/util/bam_buf.h | 0 src/util/bam_wrap.h | 0 src/util/murmur3.h | 0 src/util/timer.cpp | 0 src/util/timer.h | 0 src/util/yarn.cpp | 0 src/util/yarn.h | 0 23 files changed, 0 insertions(+), 0 deletions(-) create mode 100644 CMakeLists.txt create mode 100644 src/CMakeLists.txt create mode 100644 src/main.cpp create mode 100644 src/markdup/args.cpp create mode 100644 src/markdup/args.h create mode 100644 src/markdup/dup_metrics.h create mode 100644 src/markdup/global_vars.h create mode 100644 src/markdup/markdup.cpp create mode 100644 src/markdup/md_funcs.cpp create mode 100644 src/markdup/md_funcs.h create mode 100644 src/markdup/md_types.h create mode 100644 src/markdup/pipeline_md.cpp create mode 100644 src/markdup/pipeline_md.h create mode 100644 src/markdup/read_ends.h create mode 100644 src/markdup/read_name_parser.h create mode 100644 src/util/bam_buf.cpp create mode 100644 src/util/bam_buf.h create mode 100644 src/util/bam_wrap.h create mode 100644 src/util/murmur3.h create mode 100644 src/util/timer.cpp create mode 100644 src/util/timer.h create mode 100644 src/util/yarn.cpp create mode 100644 src/util/yarn.h diff --git a/CMakeLists.txt b/CMakeLists.txt new file mode 100644 index 0000000..e69de29 diff --git a/src/CMakeLists.txt b/src/CMakeLists.txt new file mode 100644 index 0000000..e69de29 diff --git a/src/main.cpp b/src/main.cpp new file mode 100644 index 0000000..e69de29 diff --git a/src/markdup/args.cpp b/src/markdup/args.cpp new file mode 100644 index 0000000..e69de29 diff --git a/src/markdup/args.h b/src/markdup/args.h new file mode 100644 index 0000000..e69de29 diff --git a/src/markdup/dup_metrics.h b/src/markdup/dup_metrics.h new file mode 100644 index 0000000..e69de29 diff --git a/src/markdup/global_vars.h b/src/markdup/global_vars.h new file mode 100644 index 0000000..e69de29 diff --git a/src/markdup/markdup.cpp b/src/markdup/markdup.cpp new file mode 100644 index 0000000..e69de29 diff --git a/src/markdup/md_funcs.cpp b/src/markdup/md_funcs.cpp new file mode 100644 index 0000000..e69de29 diff --git a/src/markdup/md_funcs.h b/src/markdup/md_funcs.h new file mode 100644 index 0000000..e69de29 diff --git a/src/markdup/md_types.h b/src/markdup/md_types.h new file mode 100644 index 0000000..e69de29 diff --git a/src/markdup/pipeline_md.cpp b/src/markdup/pipeline_md.cpp new file mode 100644 index 0000000..e69de29 diff --git a/src/markdup/pipeline_md.h b/src/markdup/pipeline_md.h new file mode 100644 index 0000000..e69de29 diff --git a/src/markdup/read_ends.h b/src/markdup/read_ends.h new file mode 100644 index 0000000..e69de29 diff --git a/src/markdup/read_name_parser.h b/src/markdup/read_name_parser.h new file mode 100644 index 0000000..e69de29 diff --git a/src/util/bam_buf.cpp b/src/util/bam_buf.cpp new file mode 100644 index 0000000..e69de29 diff --git a/src/util/bam_buf.h b/src/util/bam_buf.h new file mode 100644 index 0000000..e69de29 diff --git a/src/util/bam_wrap.h b/src/util/bam_wrap.h new file mode 100644 index 0000000..e69de29 diff --git a/src/util/murmur3.h b/src/util/murmur3.h new file mode 100644 index 0000000..e69de29 diff --git a/src/util/timer.cpp b/src/util/timer.cpp new file mode 100644 index 0000000..e69de29 diff --git a/src/util/timer.h b/src/util/timer.h new file mode 100644 index 0000000..e69de29 diff --git a/src/util/yarn.cpp b/src/util/yarn.cpp new file mode 100644 index 0000000..e69de29 diff --git a/src/util/yarn.h b/src/util/yarn.h new file mode 100644 index 0000000..e69de29