2024-12-14 12:24:19 +08:00
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# exe path
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set(EXECUTABLE_OUTPUT_PATH "${PROJECT_BINARY_DIR}/bin")
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# source codes path
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aux_source_directory(${PROJECT_SOURCE_DIR}/src MAIN_SRC)
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aux_source_directory(${PROJECT_SOURCE_DIR}/src/util UTIL_SRC)
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aux_source_directory(${PROJECT_SOURCE_DIR}/src/markdup MARKDUP_SRC)
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set(KTHREAD_FILE ${PROJECT_SOURCE_DIR}/ext/klib/kthread.c)
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# including path
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include_directories("${PROJECT_SOURCE_DIR}/src")
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include_directories("${PROJECT_SOURCE_DIR}/ext")
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include_directories("${PROJECT_SOURCE_DIR}/ext/htslib")
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# linking path
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link_directories("${PROJECT_SOURCE_DIR}/ext/htslib")
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# program name
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set(PG_NAME "fastdup")
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# dependency files
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add_executable(${PG_NAME} ${MAIN_SRC} ${UTIL_SRC} ${MARKDUP_SRC} ${KTHREAD_FILE})
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# link htslib
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target_link_libraries(${PG_NAME} libhts.a)
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# lib pthread
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find_package(Threads REQUIRED)
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if(THREADS_HAVE_PTHREAD_ARG)
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set_property(TARGET ${PG_NAME} PROPERTY COMPILE_OPTIONS "-pthread")
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set_property(TARGET ${PG_NAME} PROPERTY INTERFACE_COMPILE_OPTIONS "-pthread")
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endif()
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if(CMAKE_THREAD_LIBS_INIT)
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target_link_libraries(${PG_NAME} "${CMAKE_THREAD_LIBS_INIT}")
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endif()
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# lib bzip2
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find_package(BZip2 REQUIRED)
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if(BZip2_FOUND)
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include_directories(${BZIP2_INCLUDE_DIR})
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target_link_libraries(${PG_NAME} ${BZIP2_LIBRARIES})
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else()
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message(FATAL_ERROR "BZIP2 is not found")
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endif()
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# lib deflate
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2024-12-15 03:20:35 +08:00
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find_library(DeflateLib deflate)
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2024-12-14 12:24:19 +08:00
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if(DeflateLib)
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target_link_libraries(${PG_NAME} ${DeflateLib})
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else()
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message(WARNING "libdeflate is not found")
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endif()
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# lib lzma
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find_package(LibLZMA MODULE)
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if (LibLZMA_FOUND)
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include_directories(${LIBLZMA_INCLUDE_DIR})
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target_link_libraries(${PG_NAME} ${LIBLZMA_LIBRARY})
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else()
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message(FATAL_ERROR "lzma is not found")
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endif()
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2024-12-15 03:20:35 +08:00
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# lib curl
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find_package(CURL REQUIRED)
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if (CURL_FOUND)
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include_directories(${CURL_INCLUDE_DIR})
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target_link_libraries(${PG_NAME} ${CURL_LIBRARY})
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endif()
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2024-12-14 12:24:19 +08:00
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# lz
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find_library(Z_LIBRARY z)
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if(Z_LIBRARY)
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target_link_libraries(${PG_NAME} ${Z_LIBRARY})
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else()
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message(FATAL_ERROR "lz is not found")
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endif()
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# lm
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find_library(MATH_LIBRARY m)
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if(MATH_LIBRARY)
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target_link_libraries(${PG_NAME} ${MATH_LIBRARY})
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else()
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message(FATAL_ERROR "lm is not found")
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endif()
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# install path
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install(TARGETS ${PG_NAME}
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RUNTIME DESTINATION bin
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LIBRARY DESTINATION lib
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ARCHIVE DESTINATION libstatic)
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