62 lines
2.4 KiB
C
62 lines
2.4 KiB
C
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/*
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Copyright (c) 2012-2013, 2015, 2018 Genome Research Ltd.
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Author: James Bonfield <jkb@sanger.ac.uk>
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Redistribution and use in source and binary forms, with or without
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modification, are permitted provided that the following conditions are met:
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1. Redistributions of source code must retain the above copyright notice,
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this list of conditions and the following disclaimer.
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2. Redistributions in binary form must reproduce the above copyright notice,
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this list of conditions and the following disclaimer in the documentation
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and/or other materials provided with the distribution.
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3. Neither the names Genome Research Ltd and Wellcome Trust Sanger
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Institute nor the names of its contributors may be used to endorse or promote
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products derived from this software without specific prior written permission.
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THIS SOFTWARE IS PROVIDED BY GENOME RESEARCH LTD AND CONTRIBUTORS "AS IS" AND
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ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
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WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
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DISCLAIMED. IN NO EVENT SHALL GENOME RESEARCH LTD OR CONTRIBUTORS BE LIABLE
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FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
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DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
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SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
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CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
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OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
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OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
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*/
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/*! \file
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* CRAM interface.
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*
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* Consider using the higher level hts_*() API for programs that wish to
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* be file format agnostic (see htslib/hts.h).
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*
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* This API should be used for CRAM specific code. The specifics of the
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* public API are implemented in cram_io.h, cram_encode.h and cram_decode.h
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* although these should not be included directly (use this file instead).
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*/
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#ifndef CRAM_ALL_H
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#define CRAM_ALL_H
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#include "cram_samtools.h"
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#include "../header.h"
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#include "cram_structs.h"
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#include "cram_io.h"
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#include "cram_encode.h"
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#include "cram_decode.h"
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#include "cram_stats.h"
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#include "cram_codecs.h"
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#include "cram_index.h"
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// Validate against the external cram.h,
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//
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// This contains duplicated portions from cram_io.h and cram_structs.h,
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// so we want to ensure that the prototypes match.
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#include "../htslib/cram.h"
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#endif
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