87 lines
2.1 KiB
C
87 lines
2.1 KiB
C
#pragma once
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#include <stdint.h>
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#include <stdlib.h>
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#include <sys/time.h>
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// #define SHOW_PERF
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#ifdef __cplusplus
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extern "C" {
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#endif
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#define LIM_THREAD 128
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#define LIM_THREAD_PROF_TYPE 128
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#define LIM_GLOBAL_PROF_TYPE 128
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#define LIM_THREAD_DATA_TYPE 128
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#define LIM_GLOBAL_DATA_TYPE 128
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#ifdef SHOW_PERF
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extern uint64_t proc_freq;
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extern uint64_t tprof[LIM_THREAD_PROF_TYPE][LIM_THREAD];
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extern uint64_t gprof[LIM_GLOBAL_PROF_TYPE];
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#endif
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#ifdef SHOW_PERF
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#define PROF_START(tmp_time) uint64_t prof_tmp_##tmp_time = RealtimeMsec()
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#define PROF_START_AGAIN(tmp_time) prof_tmp_##tmp_time = RealtimeMsec()
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#define PROF_END(result, tmp_time) result += RealtimeMsec() - prof_tmp_##tmp_time
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#define PROF_GP_END(tmp_time) gprof[tmp_time] += RealtimeMsec() - prof_tmp_##tmp_time
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#define PROF_TP_END(tmp_time) tprof[tmp_time][thid] += RealtimeMsec() - prof_tmp_##tmp_time
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#define PROF_PRINT_START(tmp_time) uint64_t tmp_time = RealtimeMsec()
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#define PROF_PRINT_END(tmp_time) \
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tmp_time = RealtimeMsec() - tmp_time; \
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fprintf(stderr, "time %-15s: %0.2lfs\n", #tmp_time, tmp_time * 1.0 / proc_freq)
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#else
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#define PROF_START(tmp_time)
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#define PROF_END(result, tmp_time)
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#define PROF_GP_END(tmp_time)
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#define PROF_TP_END(tmp_time)
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#define PROF_PRINT_START(tmp_time)
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#define PROF_PRINT_END(tmp_time)
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#endif
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// GLOBAL
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enum { GP_0 = 0, GP_1, GP_2, GP_3, GP_4, GP_5, GP_6, GP_7, GP_8, GP_9, GP_10 };
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enum {
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GP_clip_read = 11,
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GP_calc_snp,
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GP_covariate,
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GP_read_ref,
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GP_read_vcf,
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GP_frac_err,
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GP_update_info,
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GP_merge_covs,
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GP_collapse_round,
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GP_quantize,
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GP_print_report,
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GP_read,
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GP_write,
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GP_thread_worker,
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GP_whole_process
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};
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// THREAD
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enum { TP_0 = 0, TP_1, TP_2, TP_3, TP_4, TP_5, TP_6, TP_7, TP_8, TP_9, TP_10 };
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enum {
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TP_clip_read = 11,
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TP_calc_snp,
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TP_covariate,
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TP_read_ref,
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TP_read_vcf,
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TP_calc_skips,
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TP_frac_err,
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TP_readgroup,
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TP_qualityscore,
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TP_context,
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TP_cycle,
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TP_update_info,
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TP_whole_process
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};
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uint64_t RealtimeMsec(void);
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int DisplayProfilingBQSR(int);
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int DisplayProfilingApplyBQSR(int);
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#ifdef __cplusplus
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}
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#endif |