#ifndef KHASH_HPP #define KHASH_HPP #include #include #include // for malloc() etc #include // for memset() #include // for uint32_t namespace klib { #ifndef kroundup32 // FIXME: doesn't work for 64-bit integers #define kroundup32(x) (--(x), (x)|=(x)>>1, (x)|=(x)>>2, (x)|=(x)>>4, (x)|=(x)>>8, (x)|=(x)>>16, ++(x)) #endif #define __ac_isempty(flag, i) ((flag[i>>4]>>((i&0xfU)<<1))&2) #define __ac_isdel(flag, i) ((flag[i>>4]>>((i&0xfU)<<1))&1) #define __ac_isempty(flag, i) ((flag[i>>4]>>((i&0xfU)<<1))&2) #define __ac_isdel(flag, i) ((flag[i>>4]>>((i&0xfU)<<1))&1) #define __ac_iseither(flag, i) ((flag[i>>4]>>((i&0xfU)<<1))&3) #define __ac_set_isdel_false(flag, i) (flag[i>>4]&=~(1ul<<((i&0xfU)<<1))) #define __ac_set_isempty_false(flag, i) (flag[i>>4]&=~(2ul<<((i&0xfU)<<1))) #define __ac_set_isboth_false(flag, i) (flag[i>>4]&=~(3ul<<((i&0xfU)<<1))) #define __ac_set_isdel_true(flag, i) (flag[i>>4]|=1ul<<((i&0xfU)<<1)) #define __ac_fsize(m) ((m) < 16? 1 : (m)>>4) template, typename khint_t = uint32_t> class KHash { khint_t n_buckets, count, n_occupied, upper_bound; uint32_t *flags; T *keys; public: KHash() : n_buckets(0), count(0), n_occupied(0), upper_bound(0), flags(NULL), keys(NULL) {}; ~KHash() { std::free(flags); std::free(keys); }; khint_t capacity(void) const { return n_buckets; }; khint_t size(void) const { return count; }; khint_t begin(void) const { return 0; }; khint_t end(void) const { return n_buckets; }; void exist(khint_t x) const { return !__ac_iseither(flags, x); }; T &at(khint_t x) { return keys[x]; }; khint_t get(const T &key) const { if (n_buckets) { khint_t k, i, last, mask, step = 0; mask = n_buckets - 1; k = Hash()(key); i = k & mask; last = i; while (!__ac_isempty(flags, i) && (__ac_isdel(flags, i) || !Eq()(keys[i], key))) { i = (i + (++step)) & mask; if (i == last) return n_buckets; } return __ac_iseither(flags, i)? n_buckets : i; } else return 0; }; int resize(khint_t new_n_buckets) { uint32_t *new_flags = 0; khint_t j = 1; { kroundup32(new_n_buckets); if (new_n_buckets < 4) new_n_buckets = 4; if (count >= (new_n_buckets>>1) + (new_n_buckets>>2)) j = 0; /* requested count is too small */ else { /* hash table count to be changed (shrink or expand); rehash */ new_flags = (uint32_t*)std::malloc(__ac_fsize(new_n_buckets) * sizeof(uint32_t)); if (!new_flags) return -1; ::memset(new_flags, 0xaa, __ac_fsize(new_n_buckets) * sizeof(uint32_t)); if (n_buckets < new_n_buckets) { /* expand */ T *new_keys = (T*)std::realloc((void *)keys, new_n_buckets * sizeof(T)); if (!new_keys) { std::free(new_flags); return -1; } keys = new_keys; } /* otherwise shrink */ } } if (j) { /* rehashing is needed */ for (j = 0; j != n_buckets; ++j) { if (__ac_iseither(flags, j) == 0) { T key = keys[j]; khint_t new_mask; new_mask = new_n_buckets - 1; __ac_set_isdel_true(flags, j); while (1) { /* kick-out process; sort of like in Cuckoo hashing */ khint_t k, i, step = 0; k = Hash()(key); i = k & new_mask; while (!__ac_isempty(new_flags, i)) i = (i + (++step)) & new_mask; __ac_set_isempty_false(new_flags, i); if (i < n_buckets && __ac_iseither(flags, i) == 0) { /* kick out the existing element */ { T tmp = keys[i]; keys[i] = key; key = tmp; } __ac_set_isdel_true(flags, i); /* mark it as deleted in the old hash table */ } else { /* write the element and jump out of the loop */ keys[i] = key; break; } } } } if (n_buckets > new_n_buckets) /* shrink the hash table */ keys = (T*)std::realloc((void *)keys, new_n_buckets * sizeof(T)); std::free(flags); /* free the working space */ flags = new_flags; n_buckets = new_n_buckets; n_occupied = count; upper_bound = (n_buckets>>1) + (n_buckets>>2); } return 0; }; khint_t put(const T &key, int *ret) { khint_t x; if (n_occupied >= upper_bound) { /* update the hash table */ if (n_buckets > (count<<1)) { if (resize(n_buckets - 1) < 0) { /* clear "deleted" elements */ *ret = -1; return n_buckets; } } else if (resize(n_buckets + 1) < 0) { /* expand the hash table */ *ret = -1; return n_buckets; } } /* TODO: to implement automatically shrinking; resize() already support shrinking */ { khint_t k, i, site, last, mask = n_buckets - 1, step = 0; x = site = n_buckets; k = Hash()(key); i = k & mask; if (__ac_isempty(flags, i)) x = i; /* for speed up */ else { last = i; while (!__ac_isempty(flags, i) && (__ac_isdel(flags, i) || !Eq()(keys[i], key))) { if (__ac_isdel(flags, i)) site = i; i = (i + (++step)) & mask; if (i == last) { x = site; break; } } if (x == n_buckets) { if (__ac_isempty(flags, i) && site != n_buckets) x = site; else x = i; } } } if (__ac_isempty(flags, x)) { /* not present at all */ keys[x] = key; __ac_set_isboth_false(flags, x); ++count; ++n_occupied; *ret = 1; } else if (__ac_isdel(flags, x)) { /* deleted */ keys[x] = key; __ac_set_isboth_false(flags, x); ++count; *ret = 2; } else *ret = 0; /* Don't touch keys[x] if present and not deleted */ return x; }; void del(khint_t x) { if (x != n_buckets && !__ac_iseither(flags, x)) { __ac_set_isdel_true(flags, x); --count; } }; }; } // end of namespace klib #endif