From b38214edd954714f88a8c81a29c532747298fa21 Mon Sep 17 00:00:00 2001 From: zzh Date: Tue, 6 Jan 2026 14:40:04 +0800 Subject: [PATCH] =?UTF-8?q?=E5=90=8C=E4=B8=8A?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit --- CMakeLists.txt | 2 +- src/bqsr/apply_bqsr_entry.cpp | 10 +++++----- 2 files changed, 6 insertions(+), 6 deletions(-) diff --git a/CMakeLists.txt b/CMakeLists.txt index a7a4153..c4243ec 100644 --- a/CMakeLists.txt +++ b/CMakeLists.txt @@ -5,6 +5,6 @@ set(CMAKE_CXX_STANDARD_REQUIRED ON) # set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -pthread") # set(CMAKE_BUILD_TYPE Debug) # set(CMAKE_BUILD_TYPE Release) -add_definitions(-DSHOW_PERF) +#add_definitions(-DSHOW_PERF) # add_definitions(-DSHOW_PERF=1) add_subdirectory(src) diff --git a/src/bqsr/apply_bqsr_entry.cpp b/src/bqsr/apply_bqsr_entry.cpp index 4bac80f..5bc575d 100644 --- a/src/bqsr/apply_bqsr_entry.cpp +++ b/src/bqsr/apply_bqsr_entry.cpp @@ -187,11 +187,11 @@ int SerialApplyBQSR(AuxVar &aux) { recalibratedQuals[offset] = quantizedQualityScore; } - fprintf(gf[4], "%s %d %ld ", bam_get_qname(sd.bw->b), sd.bw->b->core.flag, sd.rid); - for (size_t si = 0; si < sd.read_len; ++si) { - fprintf(gf[4], "%d ", (int)recalibratedQuals[si]); - } - fprintf(gf[4], "\n"); + // fprintf(gf[4], "%s %d %ld ", bam_get_qname(sd.bw->b), sd.bw->b->core.flag, sd.rid); + // for (size_t si = 0; si < sd.read_len; ++si) { + // fprintf(gf[4], "%d ", (int)recalibratedQuals[si]); + // } + // fprintf(gf[4], "\n"); if (sam_write1(nsgv::gOutBamFp, nsgv::gOutBamHeader, bw->b) < 0) { spdlog::error("failed writing sam record to \"{}\"", nsgv::gBqsrArg.OUTPUT_FILE.c_str());