2025-11-23 23:03:37 +08:00
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#pragma once
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#include <stdint.h>
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#include <stdlib.h>
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#include <sys/time.h>
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// #define SHOW_PERF
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#ifdef __cplusplus
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extern "C" {
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#endif
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#define LIM_THREAD 128
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#define LIM_THREAD_PROF_TYPE 128
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#define LIM_GLOBAL_PROF_TYPE 128
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#define LIM_THREAD_DATA_TYPE 128
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#define LIM_GLOBAL_DATA_TYPE 128
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#ifdef SHOW_PERF
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extern uint64_t proc_freq;
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extern uint64_t tprof[LIM_THREAD_PROF_TYPE][LIM_THREAD];
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extern uint64_t gprof[LIM_GLOBAL_PROF_TYPE];
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#endif
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#ifdef SHOW_PERF
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#define PROF_START(tmp_time) uint64_t prof_tmp_##tmp_time = RealtimeMsec()
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#define PROF_START_AGAIN(tmp_time) prof_tmp_##tmp_time = RealtimeMsec()
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#define PROF_END(result, tmp_time) result += RealtimeMsec() - prof_tmp_##tmp_time
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#define PROF_PRINT_START(tmp_time) uint64_t tmp_time = RealtimeMsec()
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#define PROF_PRINT_END(tmp_time) \
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tmp_time = RealtimeMsec() - tmp_time; \
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fprintf(stderr, "time %-15s: %0.2lfs\n", #tmp_time, tmp_time * 1.0 / proc_freq)
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#else
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#define PROF_START(tmp_time)
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#define PROF_END(result, tmp_time)
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#define PROF_PRINT_START(tmp_time)
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#define PROF_PRINT_END(tmp_time)
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#endif
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// GLOBAL
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enum { GP_0 = 0, GP_1, GP_2, GP_3, GP_4, GP_5, GP_6, GP_7, GP_8, GP_9, GP_10 };
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enum {
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GP_read_wait = 11,
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2025-12-24 12:47:26 +08:00
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GP_covariate,
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GP_read_ref,
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GP_read_vcf,
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2025-12-28 14:33:45 +08:00
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GP_update_info,
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2025-11-23 23:03:37 +08:00
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GP_gen_wait,
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GP_sort_wait,
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GP_markdup_wait,
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GP_intersect_wait,
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GP_read,
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GP_gen,
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GP_sort,
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GP_markdup,
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GP_intersect,
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GP_merge_result,
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GP_markdup_pair,
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GP_markdup_frag,
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GP_sort_pair,
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GP_sort_frag,
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GP_merge_match,
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GP_merge_markdup,
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GP_merge_update,
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GP_merge_add,
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GP_markdup_all,
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GP_final_read,
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GP_write,
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GP_whole_process
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};
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// THREAD
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enum { TP_0 = 0, TP_1, TP_2, TP_3, TP_4, TP_5, TP_6, TP_7, TP_8, TP_9, TP_10 };
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enum { TP_gen = 11, TP_sort, TP_sort_frag, TP_sort_pair};
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uint64_t RealtimeMsec(void);
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int DisplayProfiling(int);
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#ifdef __cplusplus
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}
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#endif
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