79 lines
2.8 KiB
JSON
79 lines
2.8 KiB
JSON
{
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// 使用 IntelliSense 了解相关属性。
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// 悬停以查看现有属性的描述。
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// 欲了解更多信息，请访问: https://go.microsoft.com/fwlink/?linkid=830387
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"version": "0.2.0",
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"configurations": [
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{
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"name": "bwa-mem",
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"preLaunchTask": "Build",
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"type": "cppdbg",
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"request": "launch",
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"program": "${workspaceRoot}/fastalign",
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"args": [
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"mem",
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"-t",
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"1",
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"-M",
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"-R",
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"'@RG\\tID:normal\\tSM:normal\\tPL:illumina\\tLB:normal\\tPG:bwa'",
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"~/data/reference/fmt/human_g1k_v37_decoy.fasta",
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//"~/data/dataset/D2/n1.fq.gz", "~/data/dataset/D2/n2.fq.gz",
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"~/data/dataset/D2/d1.fq", "~/data/dataset/D2/d2.fq",
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"-o",
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"/dev/null", // "D1-out.sam",
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],
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"cwd": "${workspaceFolder}", // 当前工作路径：当前文件所在的工作空间
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},
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{
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"name": "index",
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"preLaunchTask": "Build",
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"type": "cppdbg",
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"request": "launch",
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"program": "${workspaceRoot}/fastalign",
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"args": [
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"index",
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"./index/ref.fasta"
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],
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"cwd": "${workspaceFolder}", // 当前工作路径：当前文件所在的工作空间
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},
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{
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"name": "buildkmer",
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"preLaunchTask": "Build",
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"type": "cppdbg",
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"request": "launch",
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"program": "${workspaceRoot}/fastalign",
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"args": [
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"buildkmer",
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"~/data/reference/human_g1k_v37_decoy.fasta.256.64.fmt",
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"~/data/reference/human_g1k_v37_decoy.fasta.kmer"
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],
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"cwd": "${workspaceFolder}", // 当前工作路径：当前文件所在的工作空间
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},
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{
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"name": "share mem",
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"preLaunchTask": "Build",
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"type": "cppdbg",
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"request": "launch",
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"program": "${workspaceRoot}/fastalign",
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"args": [
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"shm",
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"-Z",
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"~/data1/fmt_ref/human_g1k_v37_decoy.fasta"
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],
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"cwd": "${workspaceFolder}", // 当前工作路径：当前文件所在的工作空间
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},
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{
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"name": "pac to bref",
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"preLaunchTask": "Build",
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"type": "cppdbg",
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"request": "launch",
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"program": "${workspaceRoot}/fastalign",
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"args": [
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"pac2bref",
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"~/data1/fmt_ref/human_g1k_v37_decoy.fasta"
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],
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"cwd": "${workspaceFolder}", // 当前工作路径：当前文件所在的工作空间
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}
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]
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} |