12 lines
317 B
Markdown
12 lines
317 B
Markdown
# FastBWA
|
|
Fast alignment tool based on bwa-mem
|
|
|
|
# 1. Compile the source code
|
|
make -j 8
|
|
|
|
# 2. Build the FMT-Index
|
|
./fastbwa index reference.fasta
|
|
|
|
# 3. Run sequence alignment with fastBWA
|
|
./fastbwa mem -t 64 -2 -M -R @RG\\tID:normal\\tSM:normal\\tPL:illumina\\tLB:normal\\tPG:fastbwa reference.fasta r1.fq.gz r2.fq.gz
|