20 lines
362 B
Bash
Executable File
20 lines
362 B
Bash
Executable File
thread=32
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make -j 16
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n1=~/data/dataset/D1/n1.fq.gz
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n2=~/data/dataset/D1/n2.fq.gz
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reference=~/data/reference/fmt/human_g1k_v37_decoy.fasta
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out=/dev/null
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#out=./out.sam
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prog=./fastalign
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#prog=/home/zzh/fastbwa
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time $prog mem -t $thread -M -R @RG\\tID:normal\\tSM:normal\\tPL:illumina\\tLB:normal\\tPG:bwa \
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$reference \
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$n1 \
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$n2 \
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-o $out -2
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