BWA-FastAlign/debug.h

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/*********************************************************************************************
Description: data and files for debugging
Copyright : All right reserved by .
Author :
Date : 2024/04/09
***********************************************************************************************/
#include <stdio.h>
////////////////// for debug and test //////////////////////////
#define DEBUG_FILE_OUTPUT // gfp1-4debug
// #define COUNT_SEED_LENGTH // seed1
// #define GET_FULL_MATCH_READ // reads
// #define COUNT_CALC_NUM // BSW
// #define GET_DIFFERENT_EXTENSION_LENGTH // extensionquerytarget
// #define GET_KSW_ALIGN_SEQ
// #define DEBUG_SW_EXTEND // bswdebug
////////////////////////////////////////////////////////////////
extern FILE *gf[4], *gfq[4], *gft[4], *gfi[4];
int open_qti_files();
int open_debug_files();
int close_files();