Commit Graph

16 Commits (3dfff494f76b50dda4d728ed7f32be664c1b4b10)

Author SHA1 Message Date
zzh 3dfff494f7 msw添加aln时,尝试了新的高效率的方式,结果还是差一些,代码保留,等会儿clean一下 2026-01-17 22:54:03 +08:00
zzh e335e79543 结果正确了,gen-sam过程应该还有性能提升空间 2026-01-17 01:00:43 +08:00
zzh 67cbb5b8e9 改了几个bug,比如gen_sam需要全局id,dedup-sort需要一个一个做,现在还有一个问题,就是dedup-sort之后有些skip结果会变 2026-01-16 22:16:16 +08:00
zzh fb0cd0f663 修正了几个bug,但是目前结果还是不一致,还得继续调试 2026-01-16 02:54:10 +08:00
zzh e997699a47 修正了一个bug,是xtra赋值搞错了,第二阶段应该赋值给xtras2 2026-01-15 23:04:02 +08:00
Zhang Zhonghai 4c5e1e2fa1 完成了matesw的代码,但是还有bug,结果不一致 2026-01-13 23:37:06 +08:00
Zhang Zhonghai 64b6f1fab2 粗糙的完成了mate sw计算,应该还有bug 2026-01-12 02:03:29 +08:00
Zhang Zhonghai 48fa3703ba 重构matesw计算,完成了一半的计算 2026-01-11 12:55:11 +08:00
Zhang Zhonghai ac93233f2f Fix a bug in indexing process 2026-01-07 17:27:02 +08:00
Yewen Li 0e7d839b2e
Add test datasets in README 2026-01-07 13:57:08 +08:00
Yewen Li 98f8a27a7c
Rename FastAlign to BWA-FastAlign in README 2026-01-04 00:09:48 +08:00
Yewen Li 643832af09
Revise README to enhance documentation and clarity
Expanded README with detailed features, installation instructions, and usage examples for FastAlign.
2025-12-11 18:41:20 +08:00
zzh 807c32066a update readme 2025-08-31 18:12:47 +08:00
zzh 9afd9ed39c modify readme 2025-01-14 14:36:02 +08:00
zzh 0753e77293 Fast NGS sequence alignment tool based on bwa-mem. 2025-01-14 14:34:09 +08:00
zzhofict 16a60b3db3
Initial commit 2025-01-14 14:28:47 +08:00