2025-08-31 18:12:47 +08:00
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# FastAlign
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2025-01-14 14:34:09 +08:00
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Fast alignment tool based on bwa-mem
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# 1. Compile the source code
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make -j 8
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# 2. Build the FMT-Index
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2025-08-31 18:12:47 +08:00
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./fastalign index reference.fasta
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2025-01-14 14:34:09 +08:00
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2025-08-31 18:12:47 +08:00
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# 3. Run sequence alignment with FastAlign
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./fastalign mem -t 64 -2 -M -R @RG\\tID:normal\\tSM:normal\\tPL:illumina\\tLB:normal\\tPG:fastbwa reference.fasta r1.fq.gz r2.fq.gz
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